Consumables

AAV-EF1a-DIO-OptoB2-EYFPVirus constructOpto-XRs  (AAV5)-
AAV-EF1a-DIO-OptoA1-mCherryVirus constructOpto-XRs  (AAV5)-
A1x16-Poly2-5mm-50-STD-177Silicon probe designSpecial Order-
AAV-Syn-ChrimsonR-tdTomatoVirus constructNeural Activators - Chronos/Chrimson (no AAV6)-
FG200LEPOptic fiber designØ200 µm Core Polyimide-Coated Multimode Fibers-
Flexible_Polyimide_64ch_poly3Silicon probe designPolyimide probe-
AAV-EF1a-DIO-hChR2(E123T/T159C)-p2A-EYFP-WPREVirus constructCell Filling Variants-
AAV-EF1a-DIO-hChR2(E123T/T159C)-EYFPVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-hSyn-Coff/Fon hChR2(H134R)-EYFP-WPREVirus constructINTRSECT (AAV5 & DJ)-
AAV-EF1a-DIO-mCherryVirus constructControl Fluorophores-
Virus 1Virus construct--
AAV-CaMKIIa-C1V1(t/t)-TS-p2A-EYFP-WPREVirus constructCell Filling Variants-
AAV-EF1a-DIO-C1V1(t/t)-TS-p2A-mCherry-WPREVirus constructCell Filling Variants-
AAV-Syn-CsChR-GFPVirus constructNeural Activators - Chronos/Chrimson (no AAV6)-
AAV-hSyn-C1V1(t/t)-TS-EYFPVirus constructC1V1(t/t)  (AAV2, 5, DJ)-
A4x16-poly2-5mm-20s-lin-160Silicon probe design*This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.57 Each shank has two sites in a linear layout, separated by 100µm, above the staggered tip. The sites are 100µm above the tip in the first shank, 200µm above the tip in the second shank, 300µm above the tip in the third, and 400µm above the tip in the fourth.-
AAV-hSyn-hChR2(H134R)-mCherry Virus constructOptical Excitation: ChR5-
A2x32-Poly2-6mm-23s-200-160Silicon probe design* This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.106 The right shank has a length of 5.27mm, the left shank has a length of 6mm. Special Order-
AAV-EF1a-DIO-C1V1(E162T)-TS-p2A-EYFP-WPREVirus constructCell Filling Variants-
E1-64chSilicon probe designCambridge Neurotech E-series, 64ch, 4 shanks, edge, 250µm shank spacing-
UM22-400 Optic fiber designØ400 µm Core Polyimide-Coated Multimode Fibers-
AAV-EF1a-DIO-OptoD1-EYFPVirus constructOpto-XRs  (AAV5)-
UM22-100Optic fiber designØ100 µm Core Solarization-Resistant, Polyimide-Coated Multimode Fiber-
A5x12-16-Buz-lin-5mm-100-200-160-177Silicon probe design*This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.59 The above information is for the side shanks The center shank is as follows: Probe length(mm): 6.2mm Layout: linear Vertical spacing between sites(µm): 500µm for the top 4 sites, 100µm for the remaining 12 sites, Site area (µm^2): 177-
AAV-EF1a-DIO-C1V1(E162T)-TS-p2A-mCherry-WPREVirus constructCell Filling Variants-
AAV-nEF-Con/Foff hChR2(H134R)-EYFP-WPREVirus constructINTRSECT (AAV5 & DJ)-
AAV-CAG-FLEX-tdTomatoVirus constructControl Vectors-
AAV-hSyn-Jaws-GFP-ER2Virus constructNeural Silencers - Jaws (Halo57) (no AAV6)-
A2x32-Poly5-10mm-20s-200-100Silicon probe designSpecial Order-
AAV-hSyn-FLEX-Chronos-GFPVirus constructNeural Activators - FLEX Chronos/Chrimson (no AAV6)-
FG400UEAOptic fiber designØ400 µm Core Glass Clad Silica Multimode Optical Fiber, 0.22 NA-
AAV-synP-DIO-sTpE  (Addgene 52474)Virus constructMonosynaptic Tracing-
AAV-hSyn-C1V1(t/t)-TS-p2A-EYFPVirus constructC1V1(t/t)  (AAV2, 5, DJ)-
AAV-Syn-Flex-STPEPtTAVirus constructMonosynaptic Tracing-
AAV-TRetight-BPB19GVirus constructMonosynaptic Tracing-
AAV-EF1a-Cre-WPREVirus constructINTRSECT (AAV5)-
AAV-GFAP-hChR2(H134R)-EYFPVirus constructOptical Excitation: ChR2-GFAP (AAV1, 2, 5 & 8)-
MFC_400/430-0.48_2.6mm_MF2.5_FLTOptic fiber designOptic Fiber Glass: Core diameter: 400um - Outer diameter: 430um - NA: 0.48 Length: 2.6mm Metal Ferule OD: 2.5mm Flat tip-
AAV-hThy1-eNpHR3.0-EYFP Virus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
A8x32-Poly2-5mm-20s-lin-160Silicon probe designNeuroNexus 256ch, 8 shank, poly 2 with 20µm vertical pitch, 150µm shank spacing (A8x32-Poly2-5mm-20s-lin-160)-
Buzsaki A4x16_poly3_6mm20s_200_160Silicon probe designNeuroNexus 64ch, 4 shanks, poly 3, 200µm shank spacing (Buzsaki Poly 3 custom design a4x16_poly3_6mm20s_200_160)-
AAV-synP-DIO-sTpEpB  (Addgene 52473)Virus constructMonosynaptic Tracing-
AAV-EF1a-mCherry-IRES-WGA-Cre Virus constructTranssynaptic Tracers: WGA-Cre (AAV2, 5 & 8)-
AAV-CAG-ChR2-GFPVirus constructNeural Activators-
E2-16chSilicon probe design<p>Cambridge Neurotech E-series, 16ch, 1 shank, edge</p>-
AAV-EF1a-DIO-eNpHR3.0-EYFP Virus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-CAG-FLEX-ArchT-tdTomatoVirus constructNeural Silencers (no AAV6)-
AAV-CaMKIIa-C1V1(E162T)-TS-p2A-EYFP-WPREVirus constructCell Filling Variants-
H1Silicon probe designCambridge Neurotech H1, 64ch, 2 shanks, high density sites, poly 4, 250µm shank spacing-
AAV-CaMKIIa-hChR2(E123T/T159C)-mCherryVirus constructSecond-generation Ultrafast Optogenetic Control-
P1-16chSilicon probe designCambridge Neurotech P-series, 16ch, 1 shank, poly 2-
AAV-hSyn-Flex-Jaws-KGC-GFP-ER2(AAV8 only currently)Virus constructNeural Silencers - Jaws (Halo57) (no AAV6)-
A8x1-tet-2mm-200-121Silicon probe design*This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.52 Another site with an area of 4200µm^2 is located on the fourth shank from the left, 500µm above the tetrode-
AAV-hSyn-FLEX-ChrimsonR-tdTomatoVirus constructNeural Activators - FLEX Chronos/Chrimson (no AAV6)-
AAV-CaMKIIa-EYFPVirus constructControl Fluorophores-
AAV-CaMKIIa-C1V1(E162T)-TS-p2A-mCherry-WPREVirus constructCell Filling Variants-
AAV-hSyn-Con/Foff EYFP-WPREVirus constructINTRSECT (AAV5 & DJ)-
FG600UEAOptic fiber designØ600 µm Core Glass Clad Silica Multimode Optical Fiber, 0.22 NA-
A1x32-Poly3-5mm-25s-177Silicon probe designNeuroNexus 32ch, 1 shank, poly 3 (A1x32-Poly3-5mm-25s-177)-
AAV-hSyn-Jaws-KGC-GFP-ER2Virus constructNeural Silencers - Jaws (Halo57) (no AAV6)-
Buzsaki64Silicon probe designNeuroNexus 64ch, 8 shanks, staggered, buzsaki-style, 200µm shank spacing (Buzsaki64)-
P2-32chSilicon probe design<p>Cambridge Neurotech P-series, 32ch, 2 shanks, poly 2, 250µm shank spacing</p>-
AAV-CaMKII-hChR2(E123T/T159C)-p2A-mCherry-WPREVirus constructCell Filling Variants-
AAV-CaMKII-hChR2(E123A)-mCherryVirus constructSecond-generation Ultrafast Optogenetic Control-
A1x32-7mm-100-1250Silicon probe designSpecial Order-
AAV-CAG-ArchT-GFPVirus constructNeural Silencers-
AAV-CaMKII-hChR2(T159C)-p2A-mCherry-WPREVirus constructCell Filling Variants-
AAV-CAG-Arch-GFPVirus constructNeural Silencers (no AAV6)-
AAV-CaMKIIa-eArch3.0-EYFPVirus constructThird-generation Optogenetic Inhibition: Arch 3.0 & ArchT 3.0-
H3Silicon probe designCambridge Neurotech H3, 64ch, 1 shank, linear, 20µm spacing-
A2x2-tet-3mm-150-150-121Silicon probe designtetrode to tetrode distance: 150µm See company catalog 2018_ProbeCatalog_20180515_Web, p.41-
FG600LEAOptic fiber designØ600 µm Core Glass Clad Silica Multimode Optical Fiber, 0.22 NA-
FG200UEP Optic fiber designØ200 µm Core Polyimide-Coated Multimode Fibers-
AAV-GFAP104-mCherryVirus constructGFAP Vectors (AAV8)-
FG105UCAOptic fiber designØ105 µm Core Glass Clad Silica Multimode Optical Fiber, 0.22 NA. Bare fiber. Multimode Fiber, High OH, Ø105 µm Core, 250 - 1200 nm-
AAV-hSyn-eArch3.0-EYFPVirus constructThird-generation Optogenetic Inhibition: Arch 3.0 & ArchT 3.0-
AAV-CAG-tdTomatoVirus constructControl Vectors-
AAV-EF1a-mCherry-IRES-Flpo-WPREVirus constructINTRSECT (AAV5)-
A8x8-5mm-200-160-BuzsakiSilicon probe designSpecial Order-
AAV-CaMKIIa-eNpHR3.0-mCherry Virus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-EF1a-Flpo-WPREVirus constructINTRSECT (AAV5)-
AAV-CaMKII-hChR2(E123T/T159C)-p2A-EYFP-WPREVirus constructCell Filling Variants-
AAV-EF1a-DIO-C1V1(t/t)-TS-p2A-EYFP-WPREVirus constructCell Filling Variants-
AAV-EF1a-DIO-hChR2(C128S/D156A)-EYFPVirus constructStabilized Step Function Opsins: SSFOs-
AAV-hSyn-FLEX-CoChR-GFPVirus constructNeural Activators - FLEX Chronos/Chrimson (no AAV6)-
A2x8-11mm-125-200-177Silicon probe designSpecial Order-
AAV-CaMKIIa-SwiChRCA-TS-EYFPVirus constructSwiChRCA  (AAV2, 5, DJ)-
AAV-EF1a-DIO-C1V1(E122T/E162T)-TS-mCherryVirus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-EF1a-DIO-OptoD1-mCherryVirus constructOpto-XRs  (AAV5)-
Buzsaki256Silicon probe designNeuroNexus 256ch, 8 shank, linear 50µm vertical pitch, 300µm shank spacing (Buzsaki256)-
AAV-hSyn-mCherryVirus constructControl Fluorophores-
AAV-EF1a-DIO-hChR2(H134R)-mCherryVirus constructCre-inducible AAV: DIO-AAV-
AAV-hSyn-ChR2(E123A)-EYFPVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-EF1a-DIO-ChR2(E123A)-mCherryVirus constructSecond-generation Ultrafast Optogenetic Control-
E2-64chSilicon probe design<p>Cambridge Neurotech E-series, 64ch, 4 shanks, edge, 250µm shank spacing</p>-
AAV-EF1a-fDIO-EYFP-WPREVirus constructINTRSECT (AAV5 & DJ)-
AAV-hSyn-SwiChRCA-TS-EYFPVirus constructSwiChRCA  (AAV2, 5, DJ)-
FG050LGAOptic fiber designØ50 µm Core Glass Clad Silica Multimode Optical Fiber, 0.22 NA-
AAV-EF1a-DIO-ChR2(T159C)-mCherryVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-EF1a-FLEX-Chronos-GFPVirus constructNeural Activators - FLEX Chronos/Chrimson (no AAV6)-

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Consumables

Consumables refer to items that are intended to be used once or have a limited lifespan before they need to be replaced. These include materials and products that are consumed or depleted during the course of experiments or procedures. Consumables are critical for maintaining the integrity, accuracy, and reproducibility of scientific experiments. In BrainSTEM, consumables are a shared model across users.

Types of consumable

  • Optic fiber designs: Thin, flexible fibers used for transmitting light signals, crucial for optical neural imaging and optogenetic manipulation of neurons.
  • Silicon probe designs: Microfabricated devices designed for recording or stimulating neural activity, allowing for high-resolution interfacing with neural tissue.
  • Virus constructs: Genetically engineered viruses used for delivering genes into neurons, enabling the study of gene function or the manipulation of neural activity.
  • Wire electrodes: Thin metal wires used for recording electrical signals from or delivering electrical stimulation to neurons, essential for electrophysiological studies.

Submission process

Anyone can submit consumables or submit changes to existing ones, but all submissions must be approved before they are available for usage. Please see existing entries for examples as to what to submit.

Fields

  • Name: The name of the consumable (required; must be unique).
  • Type: The type of consumable - see available types above (required).
  • Supplier: The supplier of the consumable (required).
  • Description: A description of the consumable.
  • Type specific fields: Each type has custom fields (required).

Permissions

Once a entry has been approved it becomes available to everyone.

API Access

The API allows for programmable access, enabling you to read, edit, and delete entries through the API. For details about the fields and data structure, refer to the Consumables API endpoint documentation.