Consumables

Consumable name
Supplier
AAV-CaMKIIa-OptoA1-EYFPVirus constructOpto-XRs  (AAV5)-
AAV-GFAP-hChR2(H134R)-mCherryVirus constructOptical Excitation: ChR2-GFAP (AAV1, 2, 5 & 8)-
1222Optic fiber design6
AAV-CaMKIIa-C1V1(E162T)-p2A-EYFPVirus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-CaMKIIa-hChR2(H134R)-EYFP Virus constructOptical Excitation: ChR25
A4x4-tet-5mm-150-200-121Silicon probe designtetrode to tetrode distance: 150µm first to last tetrode distance: 450µm See company catalog: 2018ProbeCatalog_20180515_Web, p.56-
UM22-300 Optic fiber designØ300 µm Core Solarization-Resistant, Polyimide-Coated Multimode Fiber-
P128-5Silicon probe design4 cortical channels situated at each shank above the main channels-
P2-64chSilicon probe design<p>Cambridge Neurotech P-series, 64ch, 4 shanks, poly 2, 250µm shank spacing</p>-
A2x2-tet-10mm-150-150-121Silicon probe designtetrode to tetrode distance: 150µm See company catalog 2018_ProbeCatalog_20180515_Web, p.41-
A4x2-tet-5mm-500-400-121Silicon probe designtetrode to tetrode distance: 500µm-
A4x2-tet-9mm-1500-170-121Silicon probe designSpecial Order-
FG105LCAOptic fiber designØ105 µm Core Glass Clad Silica Multimode Optical Fiber, 0.22 NA. Bare fiber. Multimode Fiber, 0.22 NA, Low OH, Ø105 µm Core, 400 - 2400 nm-
P1-32chSilicon probe designCambridge Neurotech P-series, 32ch, 2 shanks, poly 2, 250µm shank spacing-
AAV-EF1a-DIO-EYFPVirus constructControl Fluorophores-
AAV-EF1a-DIO-ChETA-EYFPVirus constructUltrafast Optogenetic Control: ChETA-
AAV-CaMKIIa-mCherryVirus constructControl Fluorophores-
UM22-600 Optic fiber designØ600 µm Core Solarization-Resistant, Polyimide-Coated Multimode Fiber-
AAV-EF1a-DIO-C1V1(E122T/E162T)-TS-EYFPVirus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-CaMKIIa-C1V1(E122T/E162T)-TS-EYFP Virus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
A2x32-5mm-25-200-177Silicon probe designSpecial Order-
A1x32-Poly3-10mm-25s-177Silicon probe designSpecial Order10
Buzsaki 5x12Silicon probe design*This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.55 There is a 800µm section above the staggered tip on the center shank with 4 sites in a linear layout, spaced 200µm apart30
AAV-CaMKIIa-OptoD1-EYFPVirus constructOpto-XRs  (AAV5)-
AAV-CAG-GFPVirus constructControl Vectors-
AAV-hSyn-Con/Foff hChR2(H134R)-EYFP-WPREVirus constructINTRSECT (AAV5 & DJ)-
AAV-CAG-FLEX-GFPVirus constructControl Vectors-
AAV-CaMKII-hChR2(T159C)-p2A-EYFP-WPREVirus constructCell Filling Variants-
A4x4-3mm-200-200-177Silicon probe designSpecial Order-
FG200LEAOptic fiber designØ200 µm Core Glass Clad Silica Multimode Optical Fiber, 0.22 NA-
A8x4-tet-5mm-150-200-121Silicon probe designtetrode to tetrode distance: 150µm distance from first to last tetrode: 450µm See company catalog: 2018ProbeCatalog_20180515_Web, p.66-
AAV-CaMKII-hChR2(E123A)-EYFPVirus constructSecond-generation Ultrafast Optogenetic Control-
A1x32-Poly2-5mm-50s-177Silicon probe designNeuroNexus 32ch, 1 shank, poly 2 (A1x32-Poly2-5mm-50s-177)-
AAV-CAG-FLEX-Arch-GFPVirus constructNeural Silencers (no AAV6)-
H4Silicon probe designCambridge Neurotech H4, 32ch, 1 shanks, linear, 25µm spacing-
A4x8-8mm-100-500-703Silicon probe designSpecial Order-
FG1000LEAOptic fiber designØ1000 µm Core Glass Clad Silica Multimode Optical Fiber, 0.22 NA-
AAV-CaMKIIa-hChR2(H134R)-mCherryVirus constructOptical Excitation: ChR3-
AAV-hSyn-OptoA1-EYFPVirus constructOpto-XRs  (AAV5)-
A4x32-Poly2-5mm-20s-lin-160Silicon probe design*This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.64 Each shank has two sites in a linear layout, separated by 100µm, above the staggered tip. The sites are 100µm above the tip in the first shank, 200µm above the tip in the second shank, 300µm above the tip in the third, and 400µm above the tip in the fourth.-
A1x16-Poly2-10mm-100-625Silicon probe designSpecial Order1
UM22-200Optic fiber designØ200 µm Core Polyimide-Coated Multimode Fibers-
AAV-EF1a-DIO-hChR2(H134R)-EYFPVirus constructCre-inducible AAV: DIO-AAV-
AAV-hSyn-OptoB2-EYFPVirus constructOpto-XRs  (AAV5)-
AAV-EF1a-DIO-OptoB2-mCherryVirus constructOpto-XRs  (AAV5)-
AAV-GFAP104-ChR2-mCherryVirus constructGFAP Vectors (AAV8)-
AAV-hSyn-eNpHR3.0-EYFP Virus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
A8x16-Poly2-5mm-20s-lin-160Silicon probe design*This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.67 Each shank has two sites in a linear layout, separated by 100µm, above the staggered tip. The sites are 100µm above the tip in the first shank, 200µm above the tip in the second shank, 300µm above the tip in the third, and so forth.-
AAV-EF1a-DIO-eNpHR3.0-mCherryVirus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
Buzsaki64LSilicon probe designNeuroNexus 64ch, 8 shanks, staggered, buzsaki-style, 200µm shank spacing, 10mm shanks (Buzsaki64L)8
AAV-CaMKIIa-C1V1(E122T/E162T)-TS-mCherryVirus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
Buzsaki32Silicon probe designNeuroNexus 32ch, 8 shanks, staggered, buzsaki-style, 200µm shank spacing (Buzsaki32)6
AAV-CaMKIIa-eArchT3.0-EYFPVirus constructThird-generation Optogenetic Inhibition: Arch 3.0 & ArchT 3.0-
AAV-CaMKIIa-C1V1(t/t)-TS-p2A-mCherry-WPREVirus constructCell Filling Variants-
FG400LEPOptic fiber designØ400 µm Core Polyimide-Coated Multimode Fibers-
FG200UEAOptic fiber designØ200 µm Core Glass Clad Silica Multimode Optical Fiber, 0.22 NA-
AAV-CaMKIIa-hChR2(C128S/D156A)-EYFPVirus constructStabilized Step Function Opsins: SSFOs-
AAV-Syn-CoChR-GFPVirus constructNeural Activators - Chronos/Chrimson (no AAV6)-
AAV-EF1a-DIO-hChR2(E123T/T159C)-mCherryVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-EF1a-DIO-SwiChRCA-TS-EYFP-WPREVirus constructSwiChRCA  (AAV2, 5, DJ)-
AAV-hSyn-Coff/Fon EYFP-WPREVirus constructINTRSECT (AAV5 & DJ)-
FG1000UEAOptic fiber designØ1000 µm Core Glass Clad Silica Multimode Optical Fiber, 0.22 NA-
A4x16-5mm-50-500-703Silicon probe designSpecial Order-
H2Silicon probe designCambridge Neurotech H2, 64ch, 2 shanks, linear, 25µm spacing, 250µm shank spacing6
AAV-EF1a-fDIO-hChR2(H134R)-EYFP-WPREVirus constructINTRSECT (AAV5 & DJ)-
FG400UEP Optic fiber designØ400 µm Core Polyimide-Coated Multimode Fibers-
A4x2-tet-5mm-150-200-121Silicon probe designtetrode to tetrode distance: 150µm-
AAV-EF1a-mCherry-IRES-Cre-WPREVirus constructINTRSECT (AAV5)-
AAV-CaMKIIa-OptoB2-EYFPVirus constructOpto-XRs  (AAV5)-
AAV-CaMKIIa-hChR2(C128S/D156A)-mCherry Virus constructStabilized Step Function Opsins: SSFOs-
AAV-EF1a-DIO-ChR2(T159C)-EYFPVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-CaMKII-GFP (AAV2, 5 & 8)Virus constructControl Vectors-
AAV5-hSyn-hChR2(H134R)-EYFP Virus constructOptical Excitation: ChR4-
AAV-CAG-FLEX-ArchT-GFPVirus constructNeural Silencers-
AAV-CaMKIIa-eNpHR3.0-EYFP Virus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-CamKII-Jaws-KGC-GFP-ER2Virus constructNeural Silencers - Jaws (Halo57) (no AAV6)-
AAV-hSyn-eNpHR3.0-mCherry Virus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-CAG-ArchT-tdTomatoVirus constructNeural Silencers (no AAV6)-
AAV-Syn-Chronos-GFPVirus constructNeural Activators - Chronos/Chrimson (no AAV6)-
AAV-EF1a-DIO-OptoA1-EYFPVirus constructOpto-XRs  (AAV5)-
P1-64chSilicon probe designCambridge Neurotech P-series, 64ch, 4 shanks, poly 2, 250µm shank spacing6
AAV-nEF-Coff/Fon hChR2(H134R)-EYFP-WPREVirus constructINTRSECT (AAV5 & DJ)-
A3x8-16-buz-lin-5mm-50-150-160-703Silicon probe design*This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.47 Above information is for the side shank. The side shanks follow Buzsaki "Octrode layout" Center shank information: Probe length (mm): 5mm Layout: linear Vertical spacing between sites(µm): 50µm Shank spacing between each side shank to center(µm): 82µm Shank spacing from left side shank to right side shank (µm, listed above): 300µm Site area (µm^2): 703µm^2-
A4x8-10mm-200-200-413Silicon probe designSpecial Order-
A4x2-tet-7mm-500-400-312Silicon probe designSpecial Order-
AAV-CaMKIIa-hChR2(E123T/T159C)-EYFPVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-hSyn-EYFP Virus constructControl Fluorophores-
A1x8-2.5mm-150-413Silicon probe designSpecial Order-
AAV-EF1a-DIO-eArch3.0-EYFPVirus constructThird-generation Optogenetic Inhibition: Arch 3.0 & ArchT 3.0-
AAV-EF1a-DIO-OptoB2-EYFPVirus constructOpto-XRs  (AAV5)-
AAV-EF1a-DIO-OptoA1-mCherryVirus constructOpto-XRs  (AAV5)-
A1x16-Poly2-5mm-50-STD-177Silicon probe designSpecial Order-
AAV-Syn-ChrimsonR-tdTomatoVirus constructNeural Activators - Chronos/Chrimson (no AAV6)-
FG200LEPOptic fiber designØ200 µm Core Polyimide-Coated Multimode Fibers-
Flexible_Polyimide_64ch_poly3Silicon probe designPolyimide probe2
AAV-EF1a-DIO-hChR2(E123T/T159C)-p2A-EYFP-WPREVirus constructCell Filling Variants-
AAV-EF1a-DIO-hChR2(E123T/T159C)-EYFPVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-hSyn-Coff/Fon hChR2(H134R)-EYFP-WPREVirus constructINTRSECT (AAV5 & DJ)-
AAV-EF1a-DIO-mCherryVirus constructControl Fluorophores-
Virus 1Virus construct-

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Consumables

Consumables refer to items that are intended to be used once or have a limited lifespan before they need to be replaced. These include materials and products that are consumed or depleted during the course of experiments or procedures. Consumables are critical for maintaining the integrity, accuracy, and reproducibility of scientific experiments. In BrainSTEM, consumables are a shared model across users.

Types of consumable

  • Optic fiber designs: Thin, flexible fibers used for transmitting light signals, crucial for optical neural imaging and optogenetic manipulation of neurons.
  • Silicon probe designs: Microfabricated devices designed for recording or stimulating neural activity, allowing for high-resolution interfacing with neural tissue.
  • Virus constructs: Genetically engineered viruses used for delivering genes into neurons, enabling the study of gene function or the manipulation of neural activity.
  • Wire electrodes: Thin metal wires used for recording electrical signals from or delivering electrical stimulation to neurons, essential for electrophysiological studies.

Submission process

Anyone can submit consumables or submit changes to existing ones, but all submissions must be approved before they are available for usage. Please see existing entries for examples as to what to submit.

Fields

  • Name: The name of the consumable (required; must be unique).
  • Type: The type of consumable - see available types above (required).
  • Supplier: The supplier of the consumable (required).
  • Description: A description of the consumable.
  • Type specific fields: Each type has custom fields (required).

Permissions

Once a entry has been approved it becomes available to everyone.

API Access

The API allows for programmable access, enabling you to read, edit, and delete entries through the API. For details about the fields and data structure, refer to the Consumables API endpoint documentation.