CRCNS Hippocampus: hc-2

CRCNS Hippocampus: hc-2

Multi-unit recordings from the rat hippocampus made during open field foraging. [about] The data set contains multichannel simultaneous recordings made from layer CA1 of the right dorsal hippocampus of three Long-Evans rats during open field tasks in which the animals chased randomly placed drops of water or pieces of Froot Loops while on a elevated square platform.   Data for 21 experiments are included.  The duration of the experiments ranged from about 17 minutes to 1 hour 46 minutes.  Total time for all experiments is about 19 hours.  The raw (broadband) data was recorded at 20KHz, simultaneously from 31 to 64 channels.  The raw data was processed to extract the LFPs (Local Field Potentials) and detect spikes. Included in the data set are the following items:

  • Raw (broadband data).
  • Files generated by processing the raw data to extract LFPs and detect spikes.
  • The coordinate and direction of the rats head during the experiment, given both as video files showing the position of the head, and numeric values that were extracted from the videos.
  • Matlab scripts and links to the open source software that was used to process the data.

More information about the experiments and data processing are given in the documents listed at the bottom of this page. A publication based on the data is: Mizuseki K, Sirota A, Pastalkova E, Buzsáki G., Neuron. 2009 Oct 29;64(2):267-80. (http://www.ncbi.nlm.nih.gov/pubmed/19874793).

None
None
None

None
       
Help
Projects

Projects serve as an overall way to group subjects, datasets, and collections together. A project can be used to relate experiments for publications, as well as to describe day-to-day experiments or sharing experimental data with collaborators. Projects define the overall permissions level of most other content. See section below on Permissions for further details.

Two-Part Form

The project submission form consists of two parts. In the first part, you fill in the required fields. Once you click "Create and continue," the project entry is created, and you can continue editing it on the second part of the form, which contains all the fields.

Project fields:

  • Name: The project name must be unique across BrainSTEM (required).
  • Authenticated groups: Please assign one or more groups to the project. Assigned groups will have change permissions to the project. You can continue to assign permissions on the "Manage permissions" page of the created project (required).
  • Description: A rich text description of the project.
  • Publications: List of related publication IDs formatted as strings.
  • Extra Fields: Allows you to add additional fields to the project. The values can be strings or numeric values.
  • Public Project: Determines if the project is publicly available or accessible only through the private portal.
  • Name Used in Repository: Use this field if you have another name for your project (maximum length: 200 characters).
  • Tags: Tags for the project. Tags are useful for organizational purposes, allowing you to quickly label a project and use them as filters.

Permissions

Projects define the overall permissions level for subjects, datasets, collections, and module data. You manage permissions through the management tab, where you can assign individual users and groups access levels to a project. Projects have four permission levels: membership (read access), change permissions, managers, and owners. For more information on permissions, please visit the permissions page.

Project API Access

The API allows for programmable access to projects, enabling you to read, edit, and delete projects through the API. For details about the project's fields and data structure, refer to the API Documentation on the Project API endpoint.