BrainSTEM

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API & tools
Public data guide

Feedback & community

Report an issue
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Projects

Subjects

Procedures
- Compliance • Surgery • Treatment
- Procedure episodes
- Procedure Logs
- Procedure logs
- Impedances
- Linear displacements
- Tetrode adjustments
- Procedure types
- Anesthesia, Drug and Fluid Administration
- Anesthesia
- Analgesic
- Local anesthetic
- Anti-inflammatory
- Sedative
- Antibiotic
- Fluid therapy
- Drug administration (other)
- Surgical Procedures
- Baseplating
- Burr hole
- Cranial window
- Craniectomies
- Craniotomies
- Headcaps
- Head fixations
- Headposts
- Implant Procedures
- Blood pressure sensor implant
- Breathing sensor implant
- Cannula implant
- Catheter implant
- ECG implant
- EEG implant
- ECoG implant
- EMG implant
- Generic implant
- GRIN lens implant
- Nerve cuff implant
- Optic fiber implants
- Prism implant
- Reference electrode implant
- Silicon probe implants
- Single wire electrodes
- Temperature sensor implant
- Tetrode wire electrodes
- Injection and Infusion Procedures
- Injection
- Virus injections
- Sample Collection Procedures
- Blood collection
- Tissue collection
- Brain and Tissue Procedures
- Brain extraction
- Brain lesions
- Perfusion fixations
- Euthanasia Procedures
- Barbiturate injection
- Cervical dislocation
- CO₂ chamber euthanasia
- Decapitation
- Inhalant overdose
Subject logs
- Consumption Logs
- Food consumption logs
- Water consumption logs
- Deprivation Logs
- Food deprivation logs
- Water deprivation logs
- Experimental Preparation Logs
- Habituation logs
- Handling logs
- Training session logs
- Genetic Logs
- Genotyping logs
- Housing Logs
- Housing logs
- Observation Logs
- Von Frey mechanical sensitivity test
- Hargreaves thermal sensitivity test
- Generic observation
- Physical and Health Logs
- Monitoring logs
- Welfare checks
- Weighing logs
- Wellness logs

Breedings
Cohorts

Specimen sets

Specimens
Specimen procedures
- Sectioning
- Sectioning
- Cryosectioning
- Fixation and Preservation
- Fixation (immersion)
- Cryopreservation
- Embedding
- Clearing and Mounting
- Tissue clearing
- Mounting
- Labeling and Staining
- Staining
- Immunolabeling
- In situ hybridization
- Dye loading
- Generic
- Generic intervention
Specimen logs
- Solution Logs
- Bath solution logs
- Environmental Logs
- Temperature logs
- Health Logs
- Slice health logs
- Observation Logs
- Generic observations

Sessions

Behaviors
Data acquisition
- Audio and Behavior Tracking
- Audio
- Behavioral tracking
- Video tracking
- Electrophysiology
- Electroencephalography (EEG)
- Electroneurograms
- Extracellular electrophysiology
- Intracellular electrophysiology
- Optical Imaging
- Confocal microscopy
- Fiber photometry
- Light field microscopy
- Miniscope microscopy
- Single-photon microscopy
- Three-photon microscopy
- Two-photon microscopy
- Magnetic and Functional Imaging
- Functional magnetic resonance imaging (fMRI)
- Magnetic resonance imaging (MRI)
- Magnetoencephalography (MEG)
- Tomography and Ultrasound
- Computed tomography (CT)
- Optical coherence tomography (OCT)
- Positron emission tomography (PET)
- Single-photon emission computed tomography (SPECT)
- Functional ultrasound imaging (fUS)
- General and Time-Series Data
- General timeseries
Manipulations
- Electrical and Magnetic Stimulation
- Deep brain stimulations
- Electromagnetic field stimulations
- Electrical stimulations
- Transcranial electrical stimulations
- Transcranial magnetic stimulations
- Optical, Thermal and Ultrasound Stimulation
- Optogenetic stimulations
- Thermal perturbations
- Ultrasound stimulations
- Chemical and Pharmacological Perturbations
- Liquid perturbations
- Microperfusions
- Pharmacological injections
- Pharmacological superfusions
- Pharmacological inhalations
- Sensory Stimulation
- Auditory stimulations
- Multisensory stimulations
- Odor stimulations
- Tactile stimulations
- Visual stimulations

Experimental interfaces
Collections

Personal attributes

Behavioral assays
Data storage
Inventories
- Consumable stocks
Licenses
Protocols
Setups
- Equipment

Resources

Consumables
- Reagents and Solutions
- Antibodies or immunoreagents
- Chemical reagents
- Pharmacological agents
- Physiological solutions
- Tracers or dyes
- Virus constructs
- Histology reagents
- Medical and carrier gases
- Device-Linked Consumables
- Consumable devices
- Optic fiber designs
- Optical components
- Silicon probe designs
- ECoG array designs
- Single wire electrodes
- Electrode components
- Connector components
- Surgical Consumables
- Implant / fixation materials
- Surgical disposables
- Adhesives and cements
- Fasteners and anchors
Hardware devices
- Data acquisition
- Amplifier
- Camera
- Data acquisition system
- Electroencephalography system (EEG)
- Electromyography machine
- Ephys rig
- Fiber photometry system
- Force plate
- Humidity sensor
- Light sensor
- Magnetic resonance imaging (MRI) system
- Magnetoencephalography (MEG) system
- Magnetometer
- Microphone
- Miniscope
- Motion tracking system
- Ophys rig
- Optical Coherence Tomography (OCT)
- Oscilloscope
- Photodetector
- Signal processing unit
- Single-photon emission computed tomography (SPECT)
- Temperature sensor
- Ultrasound imaging system
- Behavioral and stimulation tools
- Behavior rig
- Floating air platform
- Iontophoresis stimulator
- Laser
- LED Driver
- Light emitter
- Running Wheel
- Speaker
- Stimulation device
- Treadmill
- Environmental controllers
- Anti-vibration table
- Humidity controller
- Noise isolation chamber
- Thermal controller
- Surgical equipment
- Anesthesia system
- Injection system
- Micromanipulator
- Stereotaxic frame
- Surgical power tool
- Perfusion system
- Miscellaneous
- Biosafety cabinet
- Computer
- Electronic component
- Fume hood
- Glass micropipette puller
- Microscope
- Microcontroller (e.g., Arduino)
- Monitor
- Single-board computer (e.g., Raspberry Pi)
Suppliers

Taxonomies

Anatomical regions
Behavioral categories
Behavioral paradigms
Regulatory authorities
Setup types
Species
Strains

Dissemination

Journals
Publications

Embeddings

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