Consumables

AAV-EF1a-DIO-ChETA-EYFPVirus constructUltrafast Optogenetic Control: ChETA-
AAV-EF1a-mCherry-IRES-WGA-Cre Virus constructTranssynaptic Tracers: WGA-Cre (AAV2, 5 & 8)-
A8x16-Poly2-5mm-20s-lin-160Silicon probe design*This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.67 Each shank has two sites in a linear layout, separated by 100µm, above the staggered tip. The sites are 100µm above the tip in the first shank, 200µm above the tip in the second shank, 300µm above the tip in the third, and so forth.-
A4x32-Poly2-5mm-20s-lin-160Silicon probe design*This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.64 Each shank has two sites in a linear layout, separated by 100µm, above the staggered tip. The sites are 100µm above the tip in the first shank, 200µm above the tip in the second shank, 300µm above the tip in the third, and 400µm above the tip in the fourth.-
A5x12-16-Buz-lin-5mm-100-200-160-177Silicon probe design*This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.59 The above information is for the side shanks The center shank is as follows: Probe length(mm): 6.2mm Layout: linear Vertical spacing between sites(µm): 500µm for the top 4 sites, 100µm for the remaining 12 sites, Site area (µm^2): 177-
A4x16-poly2-5mm-20s-lin-160Silicon probe design*This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.57 Each shank has two sites in a linear layout, separated by 100µm, above the staggered tip. The sites are 100µm above the tip in the first shank, 200µm above the tip in the second shank, 300µm above the tip in the third, and 400µm above the tip in the fourth.-
Buzsaki 5x12Silicon probe design*This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.55 There is a 800µm section above the staggered tip on the center shank with 4 sites in a linear layout, spaced 200µm apart-
A8x1-tet-2mm-200-121Silicon probe design*This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.52 Another site with an area of 4200µm^2 is located on the fourth shank from the left, 500µm above the tetrode-
A3x8-16-buz-lin-5mm-50-150-160-703Silicon probe design*This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.47 Above information is for the side shank. The side shanks follow Buzsaki "Octrode layout" Center shank information: Probe length (mm): 5mm Layout: linear Vertical spacing between sites(µm): 50µm Shank spacing between each side shank to center(µm): 82µm Shank spacing from left side shank to right side shank (µm, listed above): 300µm Site area (µm^2): 703µm^2-
A2x32-Poly2-6mm-23s-200-160Silicon probe design* This probe has an non-uniform layout. See company catalog for more information: 2018ProbeCatalog_20180515_Web, p.106 The right shank has a length of 5.27mm, the left shank has a length of 6mm. Special Order-
Other optic fiber designOptic fiber designThis entry can be used temporarily when an option is missing allowing you to continue your work while an entry is being approved.-
Other silicon probe designSilicon probe designThis entry can be used temporarily when an option is missing allowing you to continue your work while an entry is being approved.-
Other single wire electrodeSingle wire electrodeThis entry can be used temporarily when an option is missing allowing you to continue your work while an entry is being approved.-
AAV-CaMKIIa-C1V1(E162T)-p2A-EYFPVirus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-EF1a-DIO-C1V1(E122T/E162T)-TS-EYFPVirus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-CaMKIIa-C1V1(E122T/E162T)-TS-EYFP Virus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-hSyn-eNpHR3.0-EYFP Virus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-EF1a-DIO-eNpHR3.0-mCherryVirus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-CaMKIIa-C1V1(E122T/E162T)-TS-mCherryVirus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-CaMKIIa-eNpHR3.0-EYFP Virus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-hSyn-eNpHR3.0-mCherry Virus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-hThy1-eNpHR3.0-EYFP Virus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-EF1a-DIO-eNpHR3.0-EYFP Virus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-CaMKIIa-eNpHR3.0-mCherry Virus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-EF1a-DIO-C1V1(E122T/E162T)-TS-mCherryVirus constructThird-generation Optogenetic Inhibition: eNpHR3.0-
AAV-CaMKIIa-eArchT3.0-EYFPVirus constructThird-generation Optogenetic Inhibition: Arch 3.0 & ArchT 3.0-
AAV-EF1a-DIO-eArch3.0-EYFPVirus constructThird-generation Optogenetic Inhibition: Arch 3.0 & ArchT 3.01
AAV-CaMKIIa-eArch3.0-EYFPVirus constructThird-generation Optogenetic Inhibition: Arch 3.0 & ArchT 3.0-
AAV-hSyn-eArch3.0-EYFPVirus constructThird-generation Optogenetic Inhibition: Arch 3.0 & ArchT 3.0-
A4x2-tet-5mm-500-400-121Silicon probe designtetrode to tetrode distance: 500µm-
A2x2-tet-10mm-150-150-121Silicon probe designtetrode to tetrode distance: 150µm See company catalog 2018_ProbeCatalog_20180515_Web, p.41-
A2x2-tet-3mm-150-150-121Silicon probe designtetrode to tetrode distance: 150µm See company catalog 2018_ProbeCatalog_20180515_Web, p.41-
A4x4-tet-5mm-150-200-121Silicon probe designtetrode to tetrode distance: 150µm first to last tetrode distance: 450µm See company catalog: 2018ProbeCatalog_20180515_Web, p.56-
A8x4-tet-5mm-150-200-121Silicon probe designtetrode to tetrode distance: 150µm distance from first to last tetrode: 450µm See company catalog: 2018ProbeCatalog_20180515_Web, p.66-
A4x2-tet-5mm-150-200-121Silicon probe designtetrode to tetrode distance: 150µm-
AAV-EF1a-DIO-SwiChRCA-TS-EYFP-WPREVirus constructSwiChRCA  (AAV2, 5, DJ)-
AAV-CaMKIIa-SwiChRCA-TS-EYFPVirus constructSwiChRCA  (AAV2, 5, DJ)-
AAV-hSyn-SwiChRCA-TS-EYFPVirus constructSwiChRCA  (AAV2, 5, DJ)-
AAV-CaMKIIa-hChR2(C128S/D156A)-EYFPVirus constructStabilized Step Function Opsins: SSFOs-
AAV-CaMKIIa-hChR2(C128S/D156A)-mCherry Virus constructStabilized Step Function Opsins: SSFOs-
AAV-EF1a-DIO-hChR2(C128S/D156A)-EYFPVirus constructStabilized Step Function Opsins: SSFOs-
AAV-EF1a-DIO-hChR2(C128S/D156A)-mCherryVirus constructStabilized Step Function Opsins: SSFOs-
A4x2-tet-9mm-1500-170-121Silicon probe designSpecial Order-
A2x32-5mm-25-200-177Silicon probe designSpecial Order-
A1x32-Poly3-10mm-25s-177Silicon probe designSpecial Order-
A4x4-3mm-200-200-177Silicon probe designSpecial Order-
A4x8-8mm-100-500-703Silicon probe designSpecial Order-
A1x16-Poly2-10mm-100-625Silicon probe designSpecial Order-
A4x16-5mm-50-500-703Silicon probe designSpecial Order-
A4x8-10mm-200-200-413Silicon probe designSpecial Order-
A4x2-tet-7mm-500-400-312Silicon probe designSpecial Order-
A1x8-2.5mm-150-413Silicon probe designSpecial Order-
A1x16-Poly2-5mm-50-STD-177Silicon probe designSpecial Order-
A2x32-Poly5-10mm-20s-200-100Silicon probe designSpecial Order-
A1x32-7mm-100-1250Silicon probe designSpecial Order-
A8x8-5mm-200-160-BuzsakiSilicon probe designSpecial Order-
A2x8-11mm-125-200-177Silicon probe designSpecial Order-
EEG screwsSingle wire electrodeSmall EEG electrode which consists of a stainless steel jeweler’s screw welded to a stainless steel lead contact. Electrodes can be easily turned into holes that have been pre-drilled in the skull. The common screw 000-120 thread and ~0.8mm OD, with a length of 2-3mm.-
AAV-CaMKII-hChR2(E123A)-EYFPVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-EF1a-DIO-hChR2(E123T/T159C)-mCherryVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-EF1a-DIO-ChR2(T159C)-EYFPVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-CaMKIIa-hChR2(E123T/T159C)-EYFPVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-EF1a-DIO-hChR2(E123T/T159C)-EYFPVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-CaMKIIa-hChR2(E123T/T159C)-mCherryVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-CaMKII-hChR2(E123A)-mCherryVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-hSyn-ChR2(E123A)-EYFPVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-EF1a-DIO-ChR2(E123A)-mCherryVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-EF1a-DIO-ChR2(T159C)-mCherryVirus constructSecond-generation Ultrafast Optogenetic Control-
AAV-EF1a-DIO-ChR2(E123A)-EYFPVirus constructSecond-generation Ultrafast Optogenetic Control-
Flexible_Polyimide_64ch_poly3Silicon probe designPolyimide probe-
P2-64chSilicon probe design<p>Cambridge Neurotech P-series, 64ch, 4 shanks, poly 2, 250µm shank spacing</p>-
P2-32chSilicon probe design<p>Cambridge Neurotech P-series, 32ch, 2 shanks, poly 2, 250µm shank spacing</p>-
E2-64chSilicon probe design<p>Cambridge Neurotech E-series, 64ch, 4 shanks, edge, 250µm shank spacing</p>-
E2-16chSilicon probe design<p>Cambridge Neurotech E-series, 16ch, 1 shank, edge</p>-
AAV-CaMKIIa-OptoA1-EYFPVirus constructOpto-XRs  (AAV5)-
AAV-CaMKIIa-OptoD1-EYFPVirus constructOpto-XRs  (AAV5)-
AAV-hSyn-OptoA1-EYFPVirus constructOpto-XRs  (AAV5)-
AAV-hSyn-OptoB2-EYFPVirus constructOpto-XRs  (AAV5)-
AAV-EF1a-DIO-OptoB2-mCherryVirus constructOpto-XRs  (AAV5)-
AAV-CaMKIIa-OptoB2-EYFPVirus constructOpto-XRs  (AAV5)-
AAV-EF1a-DIO-OptoA1-EYFPVirus constructOpto-XRs  (AAV5)-
AAV-EF1a-DIO-OptoB2-EYFPVirus constructOpto-XRs  (AAV5)-
AAV-EF1a-DIO-OptoA1-mCherryVirus constructOpto-XRs  (AAV5)-
AAV-EF1a-DIO-OptoD1-EYFPVirus constructOpto-XRs  (AAV5)-
AAV-EF1a-DIO-OptoD1-mCherryVirus constructOpto-XRs  (AAV5)-
AAV-hSyn-OptoD1-EYFPVirus constructOpto-XRs  (AAV5)-
MFC_400/430-0.48_2.6mm_MF2.5_FLTOptic fiber designOptic Fiber Glass: Core diameter: 400um - Outer diameter: 430um - NA: 0.48 Length: 2.6mm Metal Ferule OD: 2.5mm Flat tip-
AAV-hSyn-hChR2(H134R)-mCherry Virus constructOptical Excitation: ChR5-
AAV5-hSyn-hChR2(H134R)-EYFP Virus constructOptical Excitation: ChR4-
AAV-hSyn-hChR2(H134R)-EYFP Virus constructOptical Excitation: ChR4-
AAV-CaMKIIa-hChR2(H134R)-mCherryVirus constructOptical Excitation: ChR3-
AAV-GFAP-hChR2(H134R)-mCherryVirus constructOptical Excitation: ChR2-GFAP (AAV1, 2, 5 & 8)-
AAV-GFAP-hChR2(H134R)-EYFPVirus constructOptical Excitation: ChR2-GFAP (AAV1, 2, 5 & 8)-
AAV-CaMKIIa-hChR2(H134R)-EYFP Virus constructOptical Excitation: ChR2-
UM22-600 Optic fiber designØ600 µm Core Solarization-Resistant, Polyimide-Coated Multimode Fiber-
FG600UEAOptic fiber designØ600 µm Core Glass Clad Silica Multimode Optical Fiber, 0.22 NA-
FG600LEAOptic fiber designØ600 µm Core Glass Clad Silica Multimode Optical Fiber, 0.22 NA-
FG050LGAOptic fiber designØ50 µm Core Glass Clad Silica Multimode Optical Fiber, 0.22 NA-
FG400LEPOptic fiber designØ400 µm Core Polyimide-Coated Multimode Fibers-
FG400UEP Optic fiber designØ400 µm Core Polyimide-Coated Multimode Fibers-

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Consumables

Consumables refer to items that are intended to be used once or have a limited lifespan before they need to be replaced. These include materials and products that are consumed or depleted during the course of experiments or procedures. Consumables are critical for maintaining the integrity, accuracy, and reproducibility of scientific experiments. In BrainSTEM, consumables are a shared model across users.

Types of consumable

  • Optic fiber designs: Thin, flexible fibers used for transmitting light signals, crucial for optical neural imaging and optogenetic manipulation of neurons.
  • Silicon probe designs: Microfabricated devices designed for recording or stimulating neural activity, allowing for high-resolution interfacing with neural tissue.
  • Virus constructs: Genetically engineered viruses used for delivering genes into neurons, enabling the study of gene function or the manipulation of neural activity.
  • Wire electrodes: Thin metal wires used for recording electrical signals from or delivering electrical stimulation to neurons, essential for electrophysiological studies.

Submission process

Anyone can submit consumables or submit changes to existing ones, but all submissions must be approved before they are available for usage. Please see existing entries for examples as to what to submit.

Fields

  • Name: The name of the consumable (required; must be unique).
  • Type: The type of consumable - see available types above (required).
  • Supplier: The supplier of the consumable (required).
  • Description: A description of the consumable.
  • Type specific fields: Each type has custom fields (required).

Permissions

Once a entry has been approved it becomes available to everyone.

API Access

The API allows for programmable access, enabling you to read, edit, and delete entries through the API. For details about the fields and data structure, refer to the Consumables API endpoint documentation.